Co-expression analysis

Gene ID	Contig680_at
Gene name
Homology with Arabidopsis	Similar to At4g30190: AHA2 (HF=1e-99)
Module size	6 genes
NF	0.36
%ile	49.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.93	Contig680_at	Contig680	-	-	1e-99	At4g30190	AHA2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	HVSMEm0006I15r2_at	HVSMEm0006I15r2	-	-	1e+0	At5g27670	HTA7 (HISTONE H2A 7)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig7764_at	Contig7764	-	-	2e-31	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig7708_at	Contig7708	-	-	2e-41	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig12867_at	Contig12867	-	-	9e-41	At1g34430	EMB3003 (embryo defective 3003)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig3476_at	Contig3476	-	-	2e-169	At5g66760	SDH1-1	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.7	98.9	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.5	98.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.9	98.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.9	97.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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