Co-expression analysis

Gene ID	Contig6807_at
Gene name
Homology with Arabidopsis	Similar to At2g20840: secretory carrier membrane protein (SCAMP) family protein (HF=8e-19)
Module size	7 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.80	Contig6807_at	Contig6807	-	-	8e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.84	Contig5377_at	Contig5377	-	-	8e-1	At4g36250	ALDH3F1 (Aldehyde Dehydrogenase 3F1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.86	Contig10370_at	Contig10370	-	-	2e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	HM10K10r_at	HM10K10r	-	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.85	rbags22m24_s_at	rbags22m24	-	-	2e-2	At2g30360	SIP4 (SOS3-INTERACTING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.84	Contig19673_at	Contig19673	-	-	4e-23	At1g79580	SMB (SOMBRERO)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.85	Contig8779_at	Contig8779	-	-	1e+1	At5g05930	guanylyl cyclase-related (GC1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5	98.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4	96.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.3	96.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.8	95.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.6	95.3	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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