Co-expression analysis

Gene ID	Contig6773_at
Gene name
Homology with Arabidopsis	Similar to At3g20580: COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) (HF=5e-3)
Module size	6 genes
NF	0.16
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.95	Contig6773_at	Contig6773	-	-	5e-3	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig4695_at	Contig4695	-	-	7e-1	At1g67950	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig5865_at	Contig5865	-	-	2e+1	At5g04267	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig13582_at	Contig13582	-	-	2e-4	At3g03690	UNE7 (unfertilized embryo sac 7)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig6632_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.5	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the grape gene, 1621923_at, orthologous to the query gene, Contig6773_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	1621923_at	At3g20580	hypothetical protein LOC100250874	-	1e-56	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.61	83.2	1621330_at	At3g20580	hypothetical protein LOC100242242	-	4e-4	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1608867_s_at	At3g20580	hypothetical protein LOC100261444	-	3e-15	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1620870_s_at	At3g20580	hypothetical protein LOC100251175	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614891_s_at	At3g20580	hypothetical protein LOC100251643	-	2e-25	At3g56680	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613162_at	At3g20580	hypothetical protein LOC100261444	-	3e-20	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1614188_at	At3g20580	hypothetical protein LOC100243205	-	2e-25	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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