Co-expression analysis

Gene ID	Contig6773_at
Gene name
Homology with Arabidopsis	Similar to At3g20580: COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) (HF=5e-3)
Module size	6 genes
NF	0.16
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.95	Contig6773_at	Contig6773	-	-	5e-3	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig4695_at	Contig4695	-	-	7e-1	At1g67950	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig5865_at	Contig5865	-	-	2e+1	At5g04267	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig13582_at	Contig13582	-	-	2e-4	At3g03690	UNE7 (unfertilized embryo sac 7)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig6632_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.5	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.11535.6.S1_at, orthologous to the query gene, Contig6773_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	91.3	PtpAffx.11535.6.S1_at	At3g20580	hypothetical protein	-	2e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.28339.1.S1_at	At3g20580	hypothetical protein	-	1e-29	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	Ptp.2558.1.S1_at	At3g20580	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.6392.1.S1_x_at	At3g20580	hypothetical protein	-	2e-24	At5g64400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.2672.1.A1_at	At3g20580	hypothetical protein	-	1e-67	At1g51590	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.7787.1.S1_s_at	At3g20580	-	-	4e+0	At2g05642	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.2450.1.S1_at	At3g20580	hypothetical protein	-	9e-111	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.43623.2.A1_a_at	At3g20580	hypothetical protein	-	7e-5	At3g03610	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.11912.1.S1_at	At3g20580	hypothetical protein	-	2e-34	At3g07680	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.5593.1.S1_at	At3g20580	hypothetical protein	-	7e-15	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.25435.1.A1_x_at	At3g20580	hypothetical protein	-	2e+0	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.6025.1.S1_at	At3g20580	hypothetical protein	-	3e-33	At4g05590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.6423.1.S1_s_at	At3g20580	hypothetical protein /// mitochondrial beta subunit of F1 ATP synthase	-	0	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.17764.1.A1_at	At3g20580	Cl-channel clc-7	-	2e-30	At5g26240	CLC-D (CHLORIDE CHANNEL D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.1943.1.S1_at	At3g20580	hypothetical protein	-	5e-4	At5g43280	ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.4306.1.S1_at	At3g20580	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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