CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6773_at

Gene name
Homology with Arabidopsis Similar to At3g20580: COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) (HF=5e-3)

Module size 6 genes

NF 0.16

%ile 19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 0.95 Contig6773_at Contig6773 - - 5e-3 At3g20580 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) O.I. H.G. S.X.
0.27 32.1 0.95 Contig4695_at Contig4695 - - 7e-1 At1g67950 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.26 30.4 0.95 Contig5865_at Contig5865 - - 2e+1 At5g04267 unknown protein O.I. H.G. S.X.
0.23 26.1 0.95 Contig8209_at Contig8209 - - 1e+0 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) O.I. H.G. S.X.
0.14 12.9 0.94 Contig13582_at Contig13582 - - 2e-4 At3g03690 UNE7 (unfertilized embryo sac 7) O.I. H.G. S.X.
0.06 4.8 0.94 Contig6632_at Contig6632 - - 2e-3 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.3 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
11.5 99.3 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.3 99.0 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.9 98.7 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.9 97.9 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
4.3 96.4 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
4.3 96.4 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5 95.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the rice gene, Os03g0301200, orthologous to the query gene, Contig6773_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os03g0301200 At3g20580 - COBRA-like protein 7 precursor 2e-5 At3g16860 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) O.I. H.G. S.X.
0.44 58.1 Os02g0165100 At3g20580 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) O.I. H.G. S.X.
0.38 46.9 Os01g0186900 At3g20580 - Hypothetical protein 4e-1 At3g04310 unknown protein O.I. H.G. S.X.
0.29 31.1 Os01g0582600 At3g20580 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein O.I. H.G. S.X.
0.27 27.5 Os05g0127300 At3g20580 - Cytokinin-regulated kinase 1 2e-2 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) O.I. H.G. S.X.
0.26 25.6 Os03g0285800 At3g20580 - MAP kinase 1 (MAP kinase MAPK5a) 8e-4 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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