Co-expression analysis

Gene ID	Contig6653_at
Gene name
Homology with Arabidopsis	Similar to At5g12370: SEC10 (EXOCYST COMPLEX COMPONENT SEC10) (HF=2e-17)
Module size	37 genes
NF	0.31
%ile	41.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.93	Contig6653_at	Contig6653	-	-	2e-17	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.93	Contig9543_at	Contig9543	-	-	3e+0	At3g01200	AtRP2 (PPDK regulatory protein 2)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	Contig4656_at	Contig4656	-	-	1e-3	At5g60570	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig6164_s_at	Contig6164	-	-	5e-8	At5g53420	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig2909_s_at	Contig2909	-	-	7e-1	At3g18295	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	HVSMEl0015K12f_at	HVSMEl0015K12f	-	-	4e+0	At5g24370	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig13799_at	Contig13799	-	-	2e-5	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig6012_at	Contig6012	-	-	6e-16	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig3622_s_at	Contig3622	aleurone specific protein	-	2e-2	At3g46900	COPT2	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig3007_s_at	Contig3007	-	-	3e-7	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3420_at	Contig3420	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig3489_at	Contig3489	-	-	4e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig11787_at	Contig11787	-	-	2e-1	At1g31380	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig8326_at	Contig8326	-	-	7e-3	At1g53670	MSRB1 (methionine sulfoxide reductase B 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig12238_at	Contig12238	-	-	5e-5	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig8286_at	Contig8286	-	-	3e-2	At3g19010	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig9612_s_at	Contig9612	-	-	7e-1	At5g09540	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig3470_at	Contig3470	-	-	1e-11	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig5244_at	Contig5244	-	-	1e-37	At5g53460	GLT1	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig9915_at	Contig9915	-	-	1e-8	At5g16750	TOZ (TORMOZEMBRYO DEFECTIVE)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.97	Contig6968_at	Contig6968	-	-	8e-19	At3g22830	AT-HSFA6B	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	HVSMEi0003P10r2_s_at	HVSMEi0003P10r2	-	-	2e+0	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig13821_at	Contig13821	-	-	5e-4	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig9264_at	Contig9264	-	-	2e+0	At2g04870	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig8560_at	Contig8560	-	-	3e-7	At5g06120	Ran-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	HS05E04u_s_at	HS05E04u	-	-	4e-3	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig7349_at	Contig7349	-	-	1e-66	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	rbaal18e24_s_at	rbaal18e24	-	-	9e+0	At4g06536	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig7661_at	Contig7661	-	-	2e-53	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.7	92.7	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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