Co-expression analysis

Gene ID	Contig6636_at
Gene name
Homology with Arabidopsis	Similar to At5g44210: ERF9 (ERF DOMAIN PROTEIN 9) (HF=4e-11)
Module size	6 genes
NF	0.23
%ile	29.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.94	Contig6636_at	Contig6636	-	-	4e-11	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig13285_at	Contig13285	-	-	1e-8	At5g15740	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig22198_at	Contig22198	-	-	4e+0	At5g05440	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig12406_at	Contig12406	-	-	2e-7	At1g76850	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig11763_at	Contig11763	-	-	7e-2	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig6902_at	Contig6902	-	-	3e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.2	98.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.6	98.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.2	98.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.9	98.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.8	98.3	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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