Co-expression analysis

Gene ID Contig6631_at
Gene name
Homology with ArabidopsisSimilar to At1g72960: root hair defective 3 GTP-binding (RHD3) family protein (HF=5e-1)
Module size 6 genes
NF 0.44
%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.97Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.5066.90.97Contig5466_s_atContig5466--3e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.4458.90.97Contig6385_atContig6385--1e+0At2g02870kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4458.90.97Contig1502_s_atContig1502--9e-1At5g63230-O.I.H.G.S.X.
0.4053.10.97Contig13733_atContig13733--2e-3At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2528.90.97Contig1628_atContig1628--4e-8At1g69180CRC (CRABS CLAW)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.9GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
8.598.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
6.298.0GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.497.5GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.397.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.596.7GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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