Co-expression analysis

Gene ID Contig6604_s_at
Gene name
Homology with ArabidopsisSimilar to At1g18100: E12A11 (HF=1e-4)
Module size 11 genes
NF 0.43
%ile 59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.94Contig6604_s_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.5066.90.95Contig5213_atContig5213--2e-11At5g61020ECT3O.I.H.G.S.X.
0.4762.20.97Contig4193_atContig4193--1e-5At5g58970ATUCP2 (UNCOUPLING PROTEIN 2)O.I.H.G.S.X.
0.4356.40.97Contig336_atContig336--4e-1At5g66580unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig8442_atContig8442--5e-24At1g34470permease-relatedO.I.H.G.S.X.
0.3849.50.96Contig333_3_x_atContig333_3---O.I.H.G.S.X.
0.3545.10.97Contig8857_atContig8857--4e-1At2g3760060S ribosomal protein L36 (RPL36A)O.I.H.G.S.X.
0.3342.60.95Contig1353_s_atContig1353--1e-1At4g11300unknown proteinO.I.H.G.S.X.
0.3240.30.96Contig15062_atContig15062--1e-1At4g25440ZFWD1 (zinc finger WD40 repeat protein 1)O.I.H.G.S.X.
0.3240.30.97Contig3470_atContig3470--1e-11At2g37340RSZ33O.I.H.G.S.X.
0.3037.00.96Contig576_s_atContig576--2e-21At5g59690histone H4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.999.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
6.097.9GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.497.5GSM398273Moroc9-75_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398283Moroc9-75_5d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.596.7GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.496.6GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM398249Martin_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.296.3GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage