Co-expression analysis

Gene ID Contig6590_at
Gene name
Homology with ArabidopsisSimilar to At1g21410: SKP2A (HF=8e-3)
Module size 6 genes
NF 0.38
%ile 52.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.2935.50.94Contig6590_atContig6590--8e-3At1g21410SKP2AO.I.H.G.S.X.
0.5572.00.95Contig10110_s_atContig10110--4e-4At4g29870-O.I.H.G.S.X.
0.5066.90.96Contig19834_atContig19834--2e-1At5g17820peroxidase 57 (PER57) (P57) (PRXR10)O.I.H.G.S.X.
0.4458.90.96rbags8a08_s_atrbags8a08--3e+0At5g47100CBL9O.I.H.G.S.X.
0.4053.10.96Contig8803_atContig8803--1e-17At5g56750Ndr family proteinO.I.H.G.S.X.
0.2732.10.95Contig11459_atContig11459--3e-1At1g09050unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.194.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM36346710 mM B(OH)3 treatment (10B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.093.8GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage