Co-expression analysis

Gene ID	Contig6585_at
Gene name
Homology with Arabidopsis	Similar to At5g58620: zinc finger (CCCH-type) family protein (HF=1e-8)
Module size	6 genes
NF	0.87
%ile	98.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.77	Contig15168_at	Contig15168	-	-	1e-1	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.76	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.84	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.86	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.85	Contig13485_s_at	Contig13485	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.9	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
4.9	97.1	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM71150	OWB-R unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.5	95.1	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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