Co-expression analysis

Gene ID	Contig6578_at
Gene name
Homology with Arabidopsis	Similar to At1g64650: - (HF=1e-27)
Module size	13 genes
NF	0.73
%ile	93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.90	Contig6578_at	Contig6578	-	-	1e-27	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig4058_s_at	Contig4058	-	-	2e+0	At5g42070	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	92.8	0.95	Contig4999_at	Contig4999	-	-	6e-3	At3g22750	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.94	HV09N10u_s_at	HV09N10u	-	-	3e+0	At1g05450	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.96	Contig4061_at	Contig4061	-	-	2e-2	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig5976_s_at	Contig5976	-	-	4e-58	At4g39520	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig3638_at	Contig3638	-	-	7e-9	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.95	Contig590_at	Contig590	-	-	1e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	HVSMEn0025K09r2_at	HVSMEn0025K09r2	-	-	8e-1	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.95	Contig13634_at	Contig13634	-	-	1e+0	At4g33565	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.94	HVSMEn0022J01r2_at	HVSMEn0022J01r2	-	-	6e-1	At3g29370	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	Contig3639_at	Contig3639	-	-	3e-1	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.94	Contig5885_at	Contig5885	-	-	3e+0	At4g02465	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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