Co-expression analysis

Gene ID Contig6576_at
Gene name
Homology with ArabidopsisSimilar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=6e-6)
Module size 13 genes
NF 0.31
%ile 40.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.94Contig6576_atContig6576--6e-6At3g04720PR4 (PATHOGENESIS-RELATED 4)O.I.H.G.S.X.
0.4762.20.96Contig3772_atContig3772--1e-1At3g16240DELTA-TIPO.I.H.G.S.X.
0.3647.10.96Contig8241_atContig8241--1e+0At4g19390-O.I.H.G.S.X.
0.3545.10.96Contig6767_s_atContig6767--2e-11At1g13640phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.3342.60.95Contig12257_atContig12257--2e-34At5g51070ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)O.I.H.G.S.X.
0.3342.60.97HM02H15u_s_atHM02H15u--5e+0At2g16030methyltransferaseO.I.H.G.S.X.
0.3342.60.96Contig5351_atContig5351--2e-1At1g48450unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig3024_atContig3024--3e+0At3g13310DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2835.50.96Contig8826_atContig8826--4e+0At3g58830haloacid dehalogenase (HAD) superfamily proteinO.I.H.G.S.X.
0.2732.10.96Contig3559_atContig3559--1e-86At1g24510T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeO.I.H.G.S.X.
0.2224.20.96Contig9554_s_atContig9554--8e-8At4g01560MEE49 (maternal effect embryo arrest 49)O.I.H.G.S.X.
0.2021.10.96HX03D08u_s_atHX03D08u--6e-1At1g04960-O.I.H.G.S.X.
0.1716.90.96Contig3120_atContig3120--4e-2At4g20260DREPP plasma membrane polypeptide family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM398267HS41-1_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.792.7GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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