Co-expression analysis

Gene ID	Contig6576_at
Gene name
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=6e-6)
Module size	13 genes
NF	0.31
%ile	40.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig6576_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig3772_at	Contig3772	-	-	1e-1	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8241_at	Contig8241	-	-	1e+0	At4g19390	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig12257_at	Contig12257	-	-	2e-34	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	HM02H15u_s_at	HM02H15u	-	-	5e+0	At2g16030	methyltransferase	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig5351_at	Contig5351	-	-	2e-1	At1g48450	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig3024_at	Contig3024	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig3559_at	Contig3559	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig9554_s_at	Contig9554	-	-	8e-8	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HX03D08u_s_at	HX03D08u	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig3120_at	Contig3120	-	-	4e-2	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.8	93.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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