Co-expression analysis

Gene ID	Contig6527_at
Gene name
Homology with Arabidopsis	Similar to At3g07350: unknown protein (HF=8e-1)
Module size	7 genes
NF	0.41
%ile	56.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig15220_at	Contig15220	-	-	5e-1	At1g43010	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig1788_at	Contig1788	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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