Co-expression analysis

Gene ID Contig6526_at
Gene name
Homology with ArabidopsisSimilar to At5g11550: binding (HF=7e-1)
Module size 6 genes
NF 0.29
%ile 37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.94Contig6526_atContig6526--7e-1At5g11550bindingO.I.H.G.S.X.
0.5774.90.94Contig7192_atContig7192--2e-8At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.4661.00.94Contig21968_atContig21968--2e+1At5g66490unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig17563_atContig17563--2e+0At4g01915unknown proteinO.I.H.G.S.X.
0.2326.10.94HB32E08r_atHB32E08r--7e-1At3g15370ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)O.I.H.G.S.X.
0.1210.40.94Contig22044_atContig22044--2e-39At2g36170ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.499.4GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.799.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
8.098.7GSM372969genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.798.3GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.297.4GSM372971genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM372952genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.895.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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