Co-expression analysis

Gene ID	Contig6502_at
Gene name
Homology with Arabidopsis	Similar to At1g29880: glycyl-tRNA synthetase / glycine--tRNA ligase (HF=3e-38)
Module size	30 genes
NF	0.95
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	0.83	Contig6502_at	Contig6502	-	-	3e-38	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.98	100.0	0.95	Contig19429_at	Contig19429	-	-	1e-5	At1g34260	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.94	HM06A07r_at	HM06A07r	-	-	4e+0	At1g68862	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.94	Contig16210_at	Contig16210	-	-	7e-3	At1g05470	CVP2 (COTYLEDON VASCULAR PATTERN 2)	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.95	Contig17941_at	Contig17941	-	-	8e+0	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.97	Contig23305_at	Contig23305	-	-	1e-1	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.97	Contig25177_at	Contig25177	-	-	2e-20	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig2384_at	Contig2384	-	-	2e-1	At5g25570	unknown protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig1132_s_at	Contig1132	-	-	2e-14	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig6500_at	Contig6500	-	-	2e+0	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	HM01N03w_at	HM01N03w	-	-	4e+0	At4g26410	-	O.I.	H.G.	S.X.	Please select
0.97	99.6	0.98	Contig13543_at	Contig13543	-	-	3e+0	At4g23520	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.97	Contig6485_at	Contig6485	-	-	3e-1	At5g24630	BIN4 (brassinosteroid-insensitive4)	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.97	Contig6486_at	Contig6486	-	-	8e-23	At4g30780	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.96	HM03E04u_at	HM03E04u	-	-	1e+1	At5g35640	-	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	HM10A04r_at	HM10A04r	-	-	6e+0	At5g18650	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	HM09B02r_s_at	HM09B02r	-	-	4e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	Contig12396_at	Contig12396	-	-	2e+0	At3g06280	-	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	Contig18049_at	Contig18049	-	-	5e-4	At4g21065	-	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	HM10P19r_at	HM10P19r	-	-	1e+0	At4g03298	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	Contig20810_at	Contig20810	-	-	1e+0	At5g06070	RBE (RABBIT EARS)	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	Contig19370_at	Contig19370	-	-	3e+0	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.93	98.7	0.97	HM09B02r_x_at	HM09B02r	-	-	4e+0	At3g01960	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.96	Contig18578_at	Contig18578	-	-	2e+0	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.96	Contig17393_at	Contig17393	-	-	5e-3	At1g22200	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.96	Contig13999_at	Contig13999	-	-	2e+0	At1g29390	COR314-TM2	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.96	Contig6531_s_at	Contig6531	-	-	6e-1	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.95	HM02O12u_at	HM02O12u	-	-	6e-1	At4g30280	XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.97	Contig23137_at	Contig23137	-	-	2e-1	At4g35070	-	O.I.	H.G.	S.X.	Please select
0.84	94.3	0.97	Contig21529_at	Contig21529	-	-	7e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.2	99.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.3	99.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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