Co-expression analysis

Gene ID Contig6491_at
Gene name
Homology with ArabidopsisSimilar to At5g02230: haloacid dehalogenase-like hydrolase family protein (HF=6e-1)
Module size 6 genes
NF 0.55
%ile 76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5975.80.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.5369.70.96Contig8059_atContig8059--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.4863.20.96Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4762.20.96Contig8925_atContig8925--3e+0At5g66060iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.4762.20.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.96Contig2110_atContig2110--1e-2At2g39900LIM domain-containing proteinO.I.H.G.S.X.
0.5066.90.94rbaal40g12_atrbaal40g12--1e+0At5g18850unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig14279_atContig14279--6e+0At1g77290tetrachloro-p-hydroquinone reductive dehalogenase-relatedO.I.H.G.S.X.
0.5066.90.95Contig17354_atContig17354--4e+0At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.4762.20.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.4661.00.96Contig23564_atContig23564--1e+0At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedO.I.H.G.S.X.
0.4458.90.93Contig18080_atContig18080--5e+0At5g51730-O.I.H.G.S.X.
0.4458.90.94Contig23998_atContig23998--4e+0At3g21150zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4356.40.95Contig10724_atContig10724--1e-10At3g48890ATMP2O.I.H.G.S.X.
0.4356.40.96Contig18587_atContig18587--3e-2At5g10320unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig13036_atContig13036--6e-1At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.4053.10.94Contig16070_atContig16070--9e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.4053.10.94EBem10_SQ002_A13_atEBem10_SQ002_A13--8e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.4053.10.96Contig13959_atContig13959--1e+0At3g18680aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.4053.10.96Contig25651_atContig25651--5e-1At2g41225unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig7178_s_atContig7178--2e+0At4g35900FDO.I.H.G.S.X.
0.3849.50.95Contig9517_atContig9517--2e-45At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.
0.3849.50.96Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3647.10.92Contig15240_atContig15240--2e+0At2g26160-O.I.H.G.S.X.
0.3647.10.95Contig12484_atContig12484--8e-5At5g02580unknown proteinO.I.H.G.S.X.
0.3647.10.95Contig24322_atContig24322--5e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.3647.10.95Contig18870_atContig18870--6e+0At5g59320LTP3 (LIPID TRANSFER PROTEIN 3)O.I.H.G.S.X.
0.3545.10.95Contig15179_atContig15179--2e+0At5g46360KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)O.I.H.G.S.X.
0.3342.60.94Contig8132_atContig8132--4e-8At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.3342.60.95Contig14383_atContig14383--7e-1At3g56850AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)O.I.H.G.S.X.
0.3342.60.95Contig21861_atContig21861--9e-2At1g23530unknown proteinO.I.H.G.S.X.
0.3240.30.96Contig11538_atContig11538--4e-8At4g37120SMP2O.I.H.G.S.X.
0.3138.60.93Contig18310_atContig18310--1e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.3138.60.93Contig9989_atContig9989--2e-1At4g23710VAG2O.I.H.G.S.X.
0.3138.60.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.3037.00.94Contig22076_atContig22076--1e+1At5g64810WRKY51O.I.H.G.S.X.
0.3037.00.95Contig15910_atContig15910--3e-4At1g02710glycine-rich proteinO.I.H.G.S.X.
0.3037.00.96Contig11383_atContig11383--2e+0At4g36560unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig11763_atContig11763--7e-2At4g09270unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig6902_atContig6902--3e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.2935.50.95Contig18816_atContig18816--3e+0At1g711806-phosphogluconate dehydrogenase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.2935.50.96Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.2935.50.96HV_CEa0014A19r2_atHV_CEa0014A19r2--3e+0At1g58160jacalin lectin family proteinO.I.H.G.S.X.
0.2935.50.96Contig3848_atContig3848--7e-23At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.2732.10.95Contig12109_atContig12109--2e-16At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.2732.10.95Contig11378_atContig11378--2e+0At4g22530embryo-abundant protein-relatedO.I.H.G.S.X.
0.2732.10.94Contig10955_atContig10955--5e-32At3g17750protein kinase family proteinO.I.H.G.S.X.
0.2732.10.94Contig14346_atContig14346--6e+0At2g03740late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.2732.10.95Contig11105_atContig11105--2e+0At5g06270unknown proteinO.I.H.G.S.X.
0.2528.90.95Contig14340_atContig14340--5e+0At4g06634zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2528.90.96Contig15411_atContig15411--2e-4At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.2528.90.96Contig4424_atContig4424--1e-5At5g40150peroxidase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.797.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.397.4GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM419972Lemma_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.397.4GSM440957Control lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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