Co-expression analysis

Gene ID	Contig6491_at
Gene name
Homology with Arabidopsis	Similar to At5g02230: haloacid dehalogenase-like hydrolase family protein (HF=6e-1)
Module size	6 genes
NF	0.55
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig8059_at	Contig8059	-	-	8e-18	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.3	97.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.3	97.4	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.219184.1.S1_at, orthologous to the query gene, Contig6491_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	PtpAffx.219184.1.S1_at	At5g02230	-	-	6e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.209840.1.S1_at	At5g02230	hypothetical protein	-	2e-10	At5g55720	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.82250.1.A1_at	At5g02230	-	-	3e+0	At1g15260	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.222460.1.S1_at	At5g02230	hypothetical protein	-	6e+0	At5g26114	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.221546.1.S1_at	At5g02230	hypothetical protein	-	8e+0	At5g53410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.202330.1.S1_at	At5g02230	hypothetical protein	-	9e-1	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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