CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6491_at

Gene name
Homology with Arabidopsis Similar to At5g02230: haloacid dehalogenase-like hydrolase family protein (HF=6e-1)

Module size 6 genes

NF 0.55

%ile 76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.96 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.59 75.8 0.96 Contig13436_at Contig13436 - - 3e-1 At3g23200 unknown protein O.I. H.G. S.X.
0.53 69.7 0.96 Contig8059_at Contig8059 - - 8e-18 At1g08720 EDR1 (ENHANCED DISEASE RESISTANCE 1) O.I. H.G. S.X.
0.48 63.2 0.96 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.47 62.2 0.96 Contig8925_at Contig8925 - - 3e+0 At5g66060 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.47 62.2 0.96 Contig24772_at Contig24772 - - 1e-4 At5g63740 zinc finger protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.0 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.7 97.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM419975 Palea_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.3 97.4 GSM440963 Control palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.3 97.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM419972 Lemma_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.3 97.4 GSM440957 Control lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g02230, orthologous to the query gene, Contig6491_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g02230 831784 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. H.G. S.X.
0.33 38.1 At3g05320 819696 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.32 35.7 At1g44830 841047 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. H.G. S.X.
0.25 22.6 At1g50460 841468 HKL1 (HEXOKINASE-LIKE 1) F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:response to salt stress, response to cold, response to osmotic stress;C:mitochondrion, plastid;MFPOB O.I. H.G. S.X.
0.17 10.2 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. H.G. S.X.
0.07 1.9 At1g20310 838619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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