Co-expression analysis

Gene ID Contig6447_at
Gene name
Homology with ArabidopsisSimilar to At1g35670: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) (HF=4e-15)
Module size 8 genes
NF 0.66
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.88Contig6447_atContig6447--4e-15At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)O.I.H.G.S.X.
0.8092.50.86Contig6448_atContig6448--1e-2At3g06000leucine-rich repeat family proteinO.I.H.G.S.X.
0.7589.50.86Contig3043_atContig3043--8e-33At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)O.I.H.G.S.X.
0.7187.10.86Contig12417_atContig12417--2e+0At2g03630unknown proteinO.I.H.G.S.X.
0.7187.10.86Contig6607_s_atContig6607--1e-9At2g17410ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.5774.90.87Contig10734_atContig10734--7e+0At5g14070ROXY2O.I.H.G.S.X.
0.5470.30.87HVSMEm0003G22r2_atHVSMEm0003G22r2--5e+0At1g71740unknown proteinO.I.H.G.S.X.
0.4458.90.88Contig4788_atContig4788--6e-11At1g76710SDG26 (SET DOMAIN GROUP 26)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.099.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.199.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.699.4GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
11.999.3GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
11.999.3GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
11.699.3GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
11.499.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.599.2GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.799.0GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage