Co-expression analysis

Gene ID	Contig6447_at
Gene name
Homology with Arabidopsis	Similar to At1g35670: ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) (HF=4e-15)
Module size	8 genes
NF	0.66
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.88	Contig6447_at	Contig6447	-	-	4e-15	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.86	Contig6448_at	Contig6448	-	-	1e-2	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.86	Contig3043_at	Contig3043	-	-	8e-33	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.86	Contig12417_at	Contig12417	-	-	2e+0	At2g03630	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.86	Contig6607_s_at	Contig6607	-	-	1e-9	At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.87	Contig10734_at	Contig10734	-	-	7e+0	At5g14070	ROXY2	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.87	HVSMEm0003G22r2_at	HVSMEm0003G22r2	-	-	5e+0	At1g71740	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig4788_at	Contig4788	-	-	6e-11	At1g76710	SDG26 (SET DOMAIN GROUP 26)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.0	99.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.1	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.9	99.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.9	99.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.6	99.3	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.4	99.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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