Co-expression analysis

Gene ID	Contig6446_at
Gene name
Homology with Arabidopsis	Similar to At1g29680: unknown protein (HF=5e-1)
Module size	10 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.70	Contig6446_at	Contig6446	-	-	5e-1	At1g29680	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.83	Contig12051_at	Contig12051	-	-	3e+0	At5g12340	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.76	Contig20078_at	Contig20078	-	-	1e-1	At4g33850	glycosyl hydrolase family 10 protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.80	Contig20050_at	Contig20050	-	-	4e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.87	Contig3289_at	Contig3289	-	-	1e-1	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.72	Contig18789_at	Contig18789	-	-	8e-2	At1g79310	AtMC7 (metacaspase 7)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.79	HB16L13r_x_at	HB16L13r	-	-	1e+0	At3g62907	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.75	Contig328_at	Contig328	-	-	2e+0	At3g49300	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.80	Contig3287_x_at	Contig3287	-	-	6e+0	At3g15780	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.87	Contig2010_at	Contig2010	-	-	1e-10	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.6	99.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
17.6	99.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.4	98.5	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.8	98.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.4	97.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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