Co-expression analysis

Gene ID	Contig6442_at
Gene name
Homology with Arabidopsis	Similar to At2g38920: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (HF=2e-1)
Module size	30 genes
NF	0.62
%ile	84.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.94	Contig6442_at	Contig6442	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	EBro08_SQ011_O23_at	EBro08_SQ011_O23	-	-	1e+0	At1g03430	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.96	HD03N13u_at	HD03N13u	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.96	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig16230_at	Contig16230	-	-	1e+0	At3g17280	F-box family protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.95	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.95	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.95	Contig23664_at	Contig23664	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.95	EBro08_SQ010_M14_at	EBro08_SQ010_M14	-	-	1e-9	At3g02190	60S ribosomal protein L39 (RPL39B)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.95	Contig24225_at	Contig24225	-	-	2e-12	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	baal1j07_at	baal1j07	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	HS08P03u_at	HS08P03u	-	-	9e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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