Co-expression analysis

Gene ID	Contig6431_at
Gene name
Homology with Arabidopsis	Similar to At2g18110: elongation factor 1-beta, putative / EF-1-beta, putative (HF=3e-1)
Module size	7 genes
NF	0.44
%ile	60.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.89	Contig6431_at	Contig6431	-	-	3e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	HVSMEb0006I05f_x_at	HVSMEb0006I05f	-	-	8e-1	At5g19930	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig2718_s_at	Contig2718	-	-	4e-27	At3g25230	ROF1 (ROTAMASE FKBP 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	Contig6433_at	Contig6433	-	-	5e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.90	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.89	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.89	Contig6836_at	Contig6836	-	-	6e-11	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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