Co-expression analysis

Gene ID	Contig6406_at
Gene name
Homology with Arabidopsis	Similar to At5g48220: indole-3-glycerol phosphate synthase, putative (HF=7e-6)
Module size	6 genes
NF	0.61
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.95	Contig6406_at	Contig6406	-	-	7e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Contig6351_at	Contig6351	-	-	3e-4	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig14052_at	Contig14052	-	-	4e-10	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig6295_at	Contig6295	-	-	1e-17	At3g15460	brix domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig5096_at	Contig5096	-	-	2e-12	At4g16660	heat shock protein 70, putative / HSP70, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig13861_at	Contig13861	-	-	5e-1	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.6	99.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
12.0	99.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2	99.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3	99.0	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.4	98.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3	98.8	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0	98.7	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8	98.3	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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