Co-expression analysis

Gene ID	Contig6402_at
Gene name
Homology with Arabidopsis	Similar to At1g65710: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.22
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.92	Contig6402_at	Contig6402	-	-	4e-1	At1g65710	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Z48624_x_at	Z48624	-	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig8708_at	Contig8708	-	-	2e-1	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig10871_at	Contig10871	-	-	8e-6	At3g16090	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.92	HZ65O04r_at	HZ65O04r	-	-	4e-6	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	HW08A07u_at	HW08A07u	-	-	4e-1	At5g36805	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.1	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.0	98.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage