Co-expression analysis

Gene ID	Contig6398_at
Gene name
Homology with Arabidopsis	Similar to At1g48410: AGO1 (ARGONAUTE 1) (HF=2e-66)
Module size	8 genes
NF	0.14
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.2	0.91	Contig6398_at	Contig6398	-	-	2e-66	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig19575_at	Contig19575	-	-	5e-1	At4g15630	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig12289_at	Contig12289	-	-	4e-1	At1g63105	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig11926_s_at	Contig11926	-	-	2e+0	At4g18270	ATTRANS11	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig11894_at	Contig11894	-	-	1e-1	At4g24975	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig7170_at	Contig7170	-	-	2e+0	At1g32540	LOL1 (LSD ONE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig633_x_at	Contig633	-	-	1e-15	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.4	98.5	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.2	98.5	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.6	98.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.9	97.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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