Co-expression analysis

Gene ID	Contig6370_at
Gene name
Homology with Arabidopsis	Similar to At3g12390: nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative (HF=9e-9)
Module size	6 genes
NF	0.32
%ile	42.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.95	Contig6370_at	Contig6370	-	-	9e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig1955_s_at	Contig1955	-	-	5e-1	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	rbaal15n16_s_at	rbaal15n16	-	-	6e+0	At4g14640	CAM8 (CALMODULIN 8)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig12811_at	Contig12811	-	-	3e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.8	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
21.1	99.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.2	99.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.8	99.3	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
10.7	99.2	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
8.8	98.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.0	98.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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