Co-expression analysis

Gene ID Contig6351_at
Gene name
Homology with ArabidopsisSimilar to At1g42560: MLO9 (MILDEW RESISTANCE LOCUS O 9) (HF=3e-4)
Module size 6 genes
NF 0.77
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig6351_atContig6351--3e-4At1g42560MLO9 (MILDEW RESISTANCE LOCUS O 9)O.I.H.G.S.X.
0.8394.00.97Contig5096_atContig5096--2e-12At4g16660heat shock protein 70, putative / HSP70, putativeO.I.H.G.S.X.
0.7790.80.96Contig14052_atContig14052--4e-10At5g53130CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)O.I.H.G.S.X.
0.6178.70.96Contig7819_atContig7819--1e-2At5g02502unknown proteinO.I.H.G.S.X.
0.6077.30.97Contig13861_atContig13861--5e-1At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4458.90.97Contig13821_atContig13821--5e-4At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.80.95Contig7820_s_atContig7820--1e-3At1g25420unknown proteinO.I.H.G.S.X.
0.7388.70.95Contig6295_atContig6295--1e-17At3g15460brix domain-containing proteinO.I.H.G.S.X.
0.6784.70.93EBpi03_SQ001_N23_s_atEBpi03_SQ001_N23--2e+0At3g59260pirin, putativeO.I.H.G.S.X.
0.6784.70.93HVSMEi0012P14r2_x_atHVSMEi0012P14r2--8e-1At4g02850phenazine biosynthesis PhzC/PhzF family proteinO.I.H.G.S.X.
0.6178.70.93Contig5714_s_atContig5714--3e+0At5g02650unknown proteinO.I.H.G.S.X.
0.6077.30.94Contig842_x_atContig842--3e-8At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.5774.90.95Contig11157_atContig11157--1e-9At5g20165unknown proteinO.I.H.G.S.X.
0.5066.90.95HY06O21u_s_atHY06O21u--6e+0At5g54980integral membrane family proteinO.I.H.G.S.X.
0.4458.90.94Contig3859_s_atContig3859--3e-1At4g10970unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig7607_atContig7607--2e-13At1g53580GLY3 (GLYOXALASE II 3)O.I.H.G.S.X.
0.4356.40.93Contig13470_atContig13470--5e-7At1g50840POLGAMMA2 (polymerase gamma 2)O.I.H.G.S.X.
0.4255.20.92Contig6630_atContig6630--3e-3At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.4053.10.90HV_CEb0006J06r2_atHV_CEb0006J06r2--1e+0At3g56490zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.4053.10.93HT11K16u_s_atHT11K16u--9e-2At5g40330MYB23 (MYB DOMAIN PROTEIN 23)O.I.H.G.S.X.
0.4053.10.95Contig6406_atContig6406--7e-6At5g48220indole-3-glycerol phosphate synthase, putativeO.I.H.G.S.X.
0.3849.50.96Contig7705_atContig7705--1e-11At3g29200CM1 (CHORISMATE MUTASE 1)O.I.H.G.S.X.
0.3747.90.92Contig3087_x_atContig3087--1e+0At3g57980DNA-binding bromodomain-containing proteinO.I.H.G.S.X.
0.3647.10.96HVSMEl0015K12f_atHVSMEl0015K12f--4e+0At5g24370invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3545.10.94Contig4087_atContig4087--3e-4At2g37120DNA-binding S1FA family proteinO.I.H.G.S.X.
0.3342.60.89Contig8619_atContig8619--7e-16At4g35640ATSERAT3O.I.H.G.S.X.
0.3342.60.93EBpi01_SQ003_M12_atEBpi01_SQ003_M12--8e-3At2g32820-O.I.H.G.S.X.
0.3342.60.93Contig6372_atContig6372--3e-2At5g02050mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.3342.60.93Contig4663_s_atContig4663--4e-1At4g25330unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig4088_atContig4088--2e-34At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.3342.60.95Contig7606_atContig7606--3e-12At2g25280-O.I.H.G.S.X.
0.3240.30.94Contig3478_atContig3478--1e-115At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)O.I.H.G.S.X.
0.3138.60.96Contig7320_atContig7320--2e-1At1g26690emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.3138.60.96Contig3403_s_atContig3403--2e-2At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.3037.00.92Contig25813_atContig25813--2e+0At5g17280unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig5290_atContig5290defender against death (dad) 1-7e-15At2g35520DAD2 (DEFENDER AGAINST CELL DEATH 2)O.I.H.G.S.X.
0.2835.50.91Contig5374_atContig5374--3e+0At3g23170unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig765_x_atContig765--2e+0At1g79510unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig5189_atContig5189--8e-3At1g07440tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.2528.90.92Contig8069_atContig8069--4e-7At5g01610unknown proteinO.I.H.G.S.X.
0.2528.90.94Contig15137_atContig15137--4e-1At3g27200plastocyanin-like domain-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.099.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
11.399.3GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
9.699.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
8.998.9GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.698.6GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.298.5GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
6.898.3GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.598.2GSM146374Golden Promise shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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