Co-expression analysis

Gene ID Contig6351_at
Gene name
Homology with ArabidopsisSimilar to At1g42560: MLO9 (MILDEW RESISTANCE LOCUS O 9) (HF=3e-4)
Module size 6 genes
NF 0.77
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig6351_atContig6351--3e-4At1g42560MLO9 (MILDEW RESISTANCE LOCUS O 9)O.I.H.G.S.X.
0.8394.00.97Contig5096_atContig5096--2e-12At4g16660heat shock protein 70, putative / HSP70, putativeO.I.H.G.S.X.
0.7790.80.96Contig14052_atContig14052--4e-10At5g53130CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)O.I.H.G.S.X.
0.6178.70.96Contig7819_atContig7819--1e-2At5g02502unknown proteinO.I.H.G.S.X.
0.6077.30.97Contig13861_atContig13861--5e-1At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4458.90.97Contig13821_atContig13821--5e-4At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.099.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
11.399.3GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
9.699.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
8.998.9GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.698.6GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.298.5GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
6.898.3GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.598.2GSM146374Golden Promise shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18022.1.S1_at, orthologous to the query gene, Contig6351_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.6Zm.18022.1.S1_atAt1g42560barley mlo defense gene homolog1-3e-1At2g44110MLO15 (MILDEW RESISTANCE LOCUS O 15)O.I.H.G.S.X.
0.158.6Zm.8240.1.A1_atAt1g42560hypothetical protein LOC100274496-5e+0At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.051.9Zm.12072.1.S1_atAt1g42560--1e+1At5g22040-O.I.H.G.S.X.
0.051.9Zm.18083.1.A1_atAt1g42560--1e-17At2g38670PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)O.I.H.G.S.X.
0.041.5ZmAffx.830.1.A1_atAt1g42560--6e+0At5g40930TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)O.I.H.G.S.X.
0.031.1Zm.2052.1.S1_atAt1g42560NHP2-like protein 1-2e-9At4g22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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