Co-expression analysis

Gene ID Contig6351_at
Gene name
Homology with ArabidopsisSimilar to At1g42560: MLO9 (MILDEW RESISTANCE LOCUS O 9) (HF=3e-4)
Module size 6 genes
NF 0.77
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig6351_atContig6351--3e-4At1g42560MLO9 (MILDEW RESISTANCE LOCUS O 9)O.I.H.G.S.X.
0.8394.00.97Contig5096_atContig5096--2e-12At4g16660heat shock protein 70, putative / HSP70, putativeO.I.H.G.S.X.
0.7790.80.96Contig14052_atContig14052--4e-10At5g53130CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)O.I.H.G.S.X.
0.6178.70.96Contig7819_atContig7819--1e-2At5g02502unknown proteinO.I.H.G.S.X.
0.6077.30.97Contig13861_atContig13861--5e-1At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4458.90.97Contig13821_atContig13821--5e-4At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.099.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
11.399.3GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
9.699.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
8.998.9GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.698.6GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.498.5GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.298.5GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
6.898.3GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.598.2GSM146374Golden Promise shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g42560, orthologous to the query gene, Contig6351_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5773.8At1g42560840861MLO9 (MILDEW RESISTANCE LOCUS O 9)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.H.G.S.X.
0.5570.6At3g21920821747pollen coat receptor kinase, putativeF:molecular_function unknown;P:biological_process unknown;C:extracellular region;PO.I.H.G.S.X.
0.5065.3At1g20130838602hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallF:structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:unknown;MBOFPVAO.I.H.G.S.X.
0.5065.3At1g66360842954C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.4050.8At5g03590831783GDSL-motif lipase/hydrolase protein-relatedF:hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:cellular_component unknown;PFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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