Co-expression analysis

Gene ID	Contig6329_at
Gene name
Homology with Arabidopsis	Similar to At2g40490: HEME2 (HF=3e-31)
Module size	6 genes
NF	0.46
%ile	63.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig4476_at	Contig4476	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	HT07O19u_s_at	HT07O19u	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
6.6	98.2	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.4	94.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
2.6	92.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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