Co-expression analysis

Gene ID	Contig6325_at
Gene name
Homology with Arabidopsis	Similar to At5g25490: zinc finger (Ran-binding) family protein (HF=4e-1)
Module size	6 genes
NF	0.60
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	HS08J14u_x_at	HS08J14u	-	-	4e+0	At4g16265	NRPB9B	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig5112_at	Contig5112	-	-	6e-45	At1g72710	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig2924_s_at	Contig2924	-	-	9e-1	At5g16550	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.5	96.7	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage