CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6285_s_at

Gene name
Homology with Arabidopsis Similar to At1g25300: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (HF=7e-2)

Module size 16 genes

NF 0.43

%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 80.9 0.91 Contig6285_s_at Contig6285 - - 7e-2 At1g25300 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein O.I. H.G. S.X.
0.76 89.8 0.92 Contig9302_s_at Contig9302 - - 3e+0 At2g46780 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.71 87.1 0.93 EBem08_SQ003_L01_at EBem08_SQ003_L01 - - 1e+0 At3g53450 unknown protein O.I. H.G. S.X.
0.56 74.3 0.92 Contig8063_s_at Contig8063 - - 2e-9 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) O.I. H.G. S.X.
0.55 72.0 0.92 Contig3808_s_at Contig3808 - - 7e-6 At4g04080 ISU3 (ISCU-LIKE 3) O.I. H.G. S.X.
0.48 63.2 0.93 HVSMEa0005L24r2_s_at HVSMEa0005L24r2 - - 5e-1 At3g27590 unknown protein O.I. H.G. S.X.
0.39 50.5 0.93 Contig7034_at Contig7034 - - 2e-1 At5g15900 unknown protein O.I. H.G. S.X.
0.35 45.1 0.95 Contig9791_at Contig9791 - - 2e-3 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) O.I. H.G. S.X.
0.33 42.6 0.93 Contig6573_at Contig6573 - - 2e-3 At1g62500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.33 42.6 0.92 HW08B16u_s_at HW08B16u - - 8e+0 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.
0.32 40.3 0.94 Contig7060_at Contig7060 - - 4e-8 At2g02570 nucleic acid binding O.I. H.G. S.X.
0.32 40.3 0.93 Contig8218_at Contig8218 - - 6e-4 At1g28120 - O.I. H.G. S.X.
0.31 38.6 0.93 rbaal36e18_s_at rbaal36e18 - - 3e-1 At3g58280 - O.I. H.G. S.X.
0.29 35.5 0.94 Contig6816_at Contig6816 - - 2e+0 At4g13640 UNE16 (unfertilized embryo sac 16) O.I. H.G. S.X.
0.25 28.9 0.94 Contig7559_at Contig7559 - - 4e-43 At3g26560 ATP-dependent RNA helicase, putative O.I. H.G. S.X.
0.25 28.9 0.95 Contig3810_at Contig3810 - - 3e-18 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 95.3 GSM311245 28-4_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.5 95.1 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3 94.6 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1 94.1 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7 92.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6 92.3 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5 91.9 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5 91.9 GSM398282 Moroc9-75_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.4 91.4 GSM363460 Control (C) - rep1 GSE14521 Late response to boron toxicity in barley leaves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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