Co-expression analysis

Gene ID Contig6258_s_at
Gene name
Homology with ArabidopsisSimilar to At5g60340: maoC-like dehydratase domain-containing protein (HF=6e-1)
Module size 6 genes
NF 0.04
%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89Contig6258_s_atContig6258--6e-1At5g60340maoC-like dehydratase domain-containing proteinO.I.H.G.S.X.
0.1615.30.92HU11H18u_s_atHU11H18u--7e-1At1g51400photosystem II 5 kD proteinO.I.H.G.S.X.
0.075.80.88Contig6256_s_atContig6256--2e+1At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.
0.054.10.93Contig23381_atContig23381--2e+0At3g05327-O.I.H.G.S.X.
0.021.80.92HB26H03r_s_atHB26H03r--3e+0At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.011.10.92HY04M24u_s_atHY04M24u--1e-2At1g54217Expressed proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.9GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.198.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.897.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.997.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.695.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.114727.2.A1_s_at, orthologous to the query gene, Contig6258_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6187.0PtpAffx.114727.2.A1_s_atAt5g60340hypothetical protein-6e-6At1g21480exostosin family proteinO.I.H.G.S.X.
0.4875.4PtpAffx.37947.1.S1_atAt5g60340hypothetical protein-7e-38At4g20960cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.70440.1.A1_atAt5g60340hypothetical protein-6e+0At4g08028-O.I.H.G.S.X.
0.3153.7PtpAffx.162620.1.A1_atAt5g60340hypothetical protein-2e-15At5g37530thiF family proteinO.I.H.G.S.X.
0.3052.0Ptp.4322.1.S1_atAt5g60340--7e-7At3g52230unknown proteinO.I.H.G.S.X.
0.3052.0Ptp.5075.2.S1_s_atAt5g60340--2e-59At1g61150-O.I.H.G.S.X.
0.2645.2PtpAffx.159539.1.S1_atAt5g60340hypothetical protein-3e-12At5g53400nuclear movement family proteinO.I.H.G.S.X.
0.2136.5PtpAffx.9950.2.A1_s_atAt5g60340hypothetical protein-2e+1At5g38314unknown proteinO.I.H.G.S.X.
0.1830.8PtpAffx.80063.1.S1_atAt5g60340hypothetical protein-2e-9At5g48640cyclin family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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