CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6258_s_at

Gene name
Homology with Arabidopsis Similar to At5g60340: maoC-like dehydratase domain-containing protein (HF=6e-1)

Module size 6 genes

NF 0.04

%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.89 Contig6258_s_at Contig6258 - - 6e-1 At5g60340 maoC-like dehydratase domain-containing protein O.I. H.G. S.X.
0.16 15.3 0.92 HU11H18u_s_at HU11H18u - - 7e-1 At1g51400 photosystem II 5 kD protein O.I. H.G. S.X.
0.07 5.8 0.88 Contig6256_s_at Contig6256 - - 2e+1 At5g01712 CPuORF48 (Conserved peptide upstream open reading frame 48) O.I. H.G. S.X.
0.05 4.1 0.93 Contig23381_at Contig23381 - - 2e+0 At3g05327 - O.I. H.G. S.X.
0.02 1.8 0.92 HB26H03r_s_at HB26H03r - - 3e+0 At5g62470 MYB96 (myb domain protein 96) O.I. H.G. S.X.
0.01 1.1 0.92 HY04M24u_s_at HY04M24u - - 1e-2 At1g54217 Expressed protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.7 98.9 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.1 98.7 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8 97.8 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.9 97.1 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.6 95.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.6 95.3 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.87254.1.S1_at, orthologous to the query gene, Contig6258_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.8 GmaAffx.87254.1.S1_at At5g60340 - - 9e-6 At1g60030 xanthine/uracil permease family protein O.I. H.G. S.X.
0.90 93.7 Gma.8496.1.S1_at At5g60340 seed coat BURP domain protein 1 - 7e-1 At1g50290 unknown protein O.I. H.G. S.X.
0.82 91.9 GmaAffx.80424.1.S1_at At5g60340 - - 1e+1 At5g51960 - O.I. H.G. S.X.
0.78 90.6 Gma.16761.1.A1_at At5g60340 - - 2e-2 At3g08910 DNAJ heat shock protein, putative O.I. H.G. S.X.
0.78 90.6 Gma.16245.1.S1_at At5g60340 - - 6e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.78 90.6 Gma.17194.1.S1_at At5g60340 - - 6e+0 At5g22930 unknown protein O.I. H.G. S.X.
0.75 89.5 GmaAffx.40267.1.A1_at At5g60340 - - 4e-1 At1g79710 integral membrane transporter family protein O.I. H.G. S.X.
0.75 89.5 GmaAffx.58553.2.A1_at At5g60340 - - 2e-1 At1g43320 unknown protein O.I. H.G. S.X.
0.61 81.8 Gma.5402.1.S1_at At5g60340 - - 1e-6 At2g24010 scpl23 (serine carboxypeptidase-like 23) O.I. H.G. S.X.
0.60 80.7 GmaAffx.88691.1.S1_s_at At5g60340 - - 9e-1 At2g25720 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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