Co-expression analysis

Gene ID Contig6258_s_at
Gene name
Homology with ArabidopsisSimilar to At5g60340: maoC-like dehydratase domain-containing protein (HF=6e-1)
Module size 6 genes
NF 0.04
%ile 5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89Contig6258_s_atContig6258--6e-1At5g60340maoC-like dehydratase domain-containing proteinO.I.H.G.S.X.
0.1615.30.92HU11H18u_s_atHU11H18u--7e-1At1g51400photosystem II 5 kD proteinO.I.H.G.S.X.
0.075.80.88Contig6256_s_atContig6256--2e+1At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.
0.054.10.93Contig23381_atContig23381--2e+0At3g05327-O.I.H.G.S.X.
0.021.80.92HB26H03r_s_atHB26H03r--3e+0At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.011.10.92HY04M24u_s_atHY04M24u--1e-2At1g54217Expressed proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.798.9GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.198.7GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.897.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.997.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.695.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g60340, orthologous to the query gene, Contig6258_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6277.3At5g60340836156maoC-like dehydratase domain-containing proteinF:oxidoreductase activity, ATP binding;P:metabolic process;C:mitochondrion;BOMFAPO.I.H.G.S.X.
0.5166.3At1g06440837156ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;POO.I.H.G.S.X.
0.4659.8At1g80880844428pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.4457.2At1g12700837825helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing proteinF:helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:unknown;PBOMFAVO.I.H.G.S.X.
0.3948.4At3g53360824504pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.3643.6At1g12100837762lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.3439.8At3g20730821621pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.3439.8At1g74400843781pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.3439.8At3g13682820577LDL2 (LSD1-LIKE2)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.O.I.H.G.S.X.
0.3235.7At3g16710820923-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.3133.8At5g10900830957calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPABO.I.H.G.S.X.
0.3133.8At1g03980839354ATPCS2 (phytochelatin synthase 2)Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).O.I.H.G.S.X.
0.2930.3At2g33000817862ubiquitin-associated (UBA)/TS-N domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.2930.3At3g28640822494pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFO.I.H.G.S.X.
0.2830.3At2g17770816286ATBZIP27Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.O.I.H.G.S.X.
0.2830.3At3g13770820586pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.2624.4At1g33350840229pentatricopeptide (PPR) repeat-containing proteinF:binding;P:N-terminal protein myristoylation;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.2420.7At2g20980816632MCM10Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.O.I.H.G.S.X.
0.2319.3At1g68930843226pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.2319.3At3g18970821430pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.2217.5At2g34450818008high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MPOFVO.I.H.G.S.X.
0.2014.4At2g01510814680pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.1912.7At4g33170829454pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBO.I.H.G.S.X.
0.1912.7At3g13880820601pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.1710.2At5g50970835170WD-40 repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPO.I.H.G.S.X.
0.146.8At5g07620830655protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.135.8At5g58280835940transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO.I.H.G.S.X.
0.114.1At4g21880828277-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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