Co-expression analysis

Gene ID	Contig6258_s_at
Gene name
Homology with Arabidopsis	Similar to At5g60340: maoC-like dehydratase domain-containing protein (HF=6e-1)
Module size	6 genes
NF	0.04
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.89	Contig6258_s_at	Contig6258	-	-	6e-1	At5g60340	maoC-like dehydratase domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.92	HU11H18u_s_at	HU11H18u	-	-	7e-1	At1g51400	photosystem II 5 kD protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.88	Contig6256_s_at	Contig6256	-	-	2e+1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig23381_at	Contig23381	-	-	2e+0	At3g05327	-	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.92	HB26H03r_s_at	HB26H03r	-	-	3e+0	At5g62470	MYB96 (myb domain protein 96)	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.92	HY04M24u_s_at	HY04M24u	-	-	1e-2	At1g54217	Expressed protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.1	98.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.9	97.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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