Co-expression analysis

Gene ID Contig6256_s_at
Gene name
Homology with ArabidopsisSimilar to At5g01712: CPuORF48 (Conserved peptide upstream open reading frame 48) (HF=2e+1)
Module size 32 genes
NF 0.26
%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.89Contig6256_s_atContig6256--2e+1At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.
0.3849.50.94Contig5709_atContig5709--3e-56At2g30200[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferaseO.I.H.G.S.X.
0.3647.10.94Contig7870_atContig7870--9e-6At4g39170SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.
0.3647.10.93Contig6445_atContig6445--1e-1At2g20920unknown proteinO.I.H.G.S.X.
0.3545.10.93Contig11015_atContig11015--1e-29At4g14147ARPC4O.I.H.G.S.X.
0.3443.60.93Contig10961_atContig10961--2e-1At1g78260RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3240.30.95Contig8908_atContig8908--3e-12At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3138.60.96Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.2935.50.94Contig6627_atContig6627--1e-6At1g77710-O.I.H.G.S.X.
0.2630.40.92Contig5746_atContig5746--3e+0At5g64820unknown proteinO.I.H.G.S.X.
0.2630.40.94Contig12450_atContig12450--2e+0At5g58370GTP bindingO.I.H.G.S.X.
0.2528.90.92Contig8762_atContig8762--5e+0At5g59410-O.I.H.G.S.X.
0.2528.90.94rbaal22l07_s_atrbaal22l07vacuolar ATPase B subunit-1e-1At3g44100MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.2528.90.94Contig12931_atContig12931--5e+0At4g13575unknown proteinO.I.H.G.S.X.
0.2326.10.92Contig2324_atContig2324--8e-2At1g42710-O.I.H.G.S.X.
0.2326.10.94Contig12587_atContig12587--4e-1At5g64530XND1O.I.H.G.S.X.
0.2224.20.91Contig6786_atContig6786--1e+0At1g25460oxidoreductase family proteinO.I.H.G.S.X.
0.2224.20.94Contig19826_atContig19826--2e+0At1g16770unknown proteinO.I.H.G.S.X.
0.2224.20.95Contig4360_atContig4360--2e-6At5g61500ATG3O.I.H.G.S.X.
0.2021.10.95Contig4091_atContig4091--3e-13At1g47128RD21 (responsive to dehydration 21)O.I.H.G.S.X.
0.2021.10.95Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.2021.10.95Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.1919.60.92Contig716_atContig716--1e+0At3g02840immediate-early fungal elicitor family proteinO.I.H.G.S.X.
0.1919.60.95Contig18916_atContig18916--9e-1At5g09995unknown proteinO.I.H.G.S.X.
0.1919.60.95Contig4090_s_atContig4090triticain beta 2-4e-7At5g43060cysteine proteinase, putative / thiol protease, putativeO.I.H.G.S.X.
0.1818.20.95Contig8153_atContig8153--5e-42At3g09550protein bindingO.I.H.G.S.X.
0.1716.90.95Contig24657_atContig24657--2e-2At5g18940Mo25 family proteinO.I.H.G.S.X.
0.1615.30.95Contig11107_atContig11107--7e-4At2g45140PVA12 (PLANT VAP HOMOLOG 12)O.I.H.G.S.X.
0.1615.30.94Contig7622_atContig7622--2e-7At3g18380sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.1514.10.95Contig9507_atContig9507--6e-1At2g43950OEP37O.I.H.G.S.X.
0.1514.10.94Contig5487_s_atContig5487--3e-1At5g65207unknown proteinO.I.H.G.S.X.
0.1412.90.95Contig19553_atContig19553--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.692.3GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.491.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.290.3GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.290.3GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.290.3GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.189.7GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.189.7GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
2.089.0GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.089.0GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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