Co-expression analysis

Gene ID	Contig6256_s_at
Gene name
Homology with Arabidopsis	Similar to At5g01712: CPuORF48 (Conserved peptide upstream open reading frame 48) (HF=2e+1)
Module size	32 genes
NF	0.26
%ile	32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	0.89	Contig6256_s_at	Contig6256	-	-	2e+1	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig5709_at	Contig5709	-	-	3e-56	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig7870_at	Contig7870	-	-	9e-6	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig6445_at	Contig6445	-	-	1e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig11015_at	Contig11015	-	-	1e-29	At4g14147	ARPC4	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.93	Contig10961_at	Contig10961	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig8908_at	Contig8908	-	-	3e-12	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig8129_at	Contig8129	-	-	5e-1	At1g23145	RALFL2 (RALF-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig6627_at	Contig6627	-	-	1e-6	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig5746_at	Contig5746	-	-	3e+0	At5g64820	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig12450_at	Contig12450	-	-	2e+0	At5g58370	GTP binding	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig8762_at	Contig8762	-	-	5e+0	At5g59410	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	rbaal22l07_s_at	rbaal22l07	vacuolar ATPase B subunit	-	1e-1	At3g44100	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig12931_at	Contig12931	-	-	5e+0	At4g13575	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig2324_at	Contig2324	-	-	8e-2	At1g42710	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig12587_at	Contig12587	-	-	4e-1	At5g64530	XND1	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.91	Contig6786_at	Contig6786	-	-	1e+0	At1g25460	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig19826_at	Contig19826	-	-	2e+0	At1g16770	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig4091_at	Contig4091	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig716_at	Contig716	-	-	1e+0	At3g02840	immediate-early fungal elicitor family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig18916_at	Contig18916	-	-	9e-1	At5g09995	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig4090_s_at	Contig4090	triticain beta 2	-	4e-7	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig8153_at	Contig8153	-	-	5e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig24657_at	Contig24657	-	-	2e-2	At5g18940	Mo25 family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig11107_at	Contig11107	-	-	7e-4	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig7622_at	Contig7622	-	-	2e-7	At3g18380	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig9507_at	Contig9507	-	-	6e-1	At2g43950	OEP37	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig5487_s_at	Contig5487	-	-	3e-1	At5g65207	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig19553_at	Contig19553	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.3	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.3	90.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.2	90.3	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.2	90.3	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.1	89.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.1	89.7	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.0	89.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.0	89.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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