CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6238_s_at

Gene name
Homology with Arabidopsis Similar to At2g30860: ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) (HF=1e-7)

Module size 6 genes

NF 0.65

%ile 86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.87 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.83 94.0 0.87 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.60 77.3 0.90 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.55 72.0 0.88 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein O.I. H.G. S.X.
0.44 58.9 0.87 HVSMEf0003F23r2_at HVSMEf0003F23r2 - - 9e-1 At5g09570 - O.I. H.G. S.X.
0.27 32.1 0.87 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.2 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5 99.0 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2 98.7 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8 98.6 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6 98.6 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0 98.4 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
6.0 97.9 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8 97.8 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3 97.4 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os01g0369700, orthologous to the query gene, Contig6238_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 Os01g0369700 At2g30860 - Glutathione S-transferase GST 8 (EC 2.5.1.18) 2e+0 At5g53250 AGP22 (ARABINOGALACTAN PROTEIN 22) O.I. H.G. S.X.
0.63 82.7 Os01g0627400 At2g30860 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 4e+0 At3g14630 CYP72A9 O.I. H.G. S.X.
0.63 82.7 Os10g0528400 At2g30860 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.48 63.7 Os10g0530900 At2g30860 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.46 60.9 Os10g0528300 At2g30860 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) O.I. H.G. S.X.
0.44 58.1 Os01g0266500 At2g30860 - Phenazine biosynthesis PhzC/PhzF protein familyprotein 9e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.44 58.1 Os01g0697100 At2g30860 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At4g15260 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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