Co-expression analysis

Gene ID	Contig6238_s_at
Gene name
Homology with Arabidopsis	Similar to At2g30860: ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) (HF=1e-7)
Module size	6 genes
NF	0.65
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.87	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.87	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.90	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.87	Contig6433_at	Contig6433	-	-	5e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2	98.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8	98.6	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL283Contig1_at, orthologous to the query gene, Contig6238_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	PsAffx.CL283Contig1_at	At2g30860	-	-	6e-2	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	PsAffx.CL795Contig1_at	At2g30860	-	-	3e+0	At5g23160	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	PsAffx.CL123Contig1_at	At2g30860	-	-	2e+0	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	PsAffx.CL399Contig1_at	At2g30860	-	-	1e+1	At5g60810	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	GmaAffx.35376.1.S1_s_at	At2g30860	-	-	1e+1	At4g30180	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please select
0.72	88.1	PsAffx.CL1432Contig1_at	At2g30860	-	-	2e+0	At5g53220	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	PsAffx.CL569Contig1_at	At2g30860	-	-	1e-4	At5g40580	PBB2	O.I.	H.G.	S.X.	Please select
0.70	87.1	PsAffx.CL64Contig2_at	At2g30860	-	-	8e+0	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	PsAffx.CL64Contig1_s_at	At2g30860	-	-	4e-1	At1g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	PsAffx.CL1363Contig1_at	At2g30860	-	-	2e-23	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL321Contig1_at	At2g30860	-	-	7e+0	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL414Contig1_at	At2g30860	-	-	5e+0	At3g15395	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.0	PsAffx.CL87Contig1_at	At2g30860	-	-	3e-2	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL1667Contig1_at	At2g30860	-	-	4e+0	At4g30010	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL13Contig1_at	At2g30860	-	-	7e-2	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL344Contig1_at	At2g30860	-	-	2e+0	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.psHB001xP16f_at	At2g30860	-	-	4e+0	At4g19830	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.CL188Contig1_at	At2g30860	-	-	6e+0	At5g13100	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	PsAffx.CL199Contig1_at	At2g30860	-	-	2e+0	At4g19740	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.62	82.1	GmaAffx.76368.1.A1_s_at	At2g30860	-	-	1e+1	At5g54067	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.C65000037_s_at	At2g30860	-	-	9e-10	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.C325000004_at	At2g30860	-	-	2e-1	At3g25890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.C18000032_s_at	At2g30860	-	-	3e+0	At3g32330	DNA repair protein-related	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.CL111Contig1_at	At2g30860	-	-	9e+0	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.60	80.7	PsAffx.CL221Contig1_at	At2g30860	-	-	2e+0	At5g24460	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	PsAffx.CL74Contig1_at	At2g30860	-	-	4e-16	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	PsAffx.psHB033xH23f_at	At2g30860	-	-	1e+1	At4g31280	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.CL136Contig1_at	At2g30860	-	-	2e+0	At1g28580	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.CL87Contig2_s_at	At2g30860	-	-	1e+0	At1g60010	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.CL57Contig1_at	At2g30860	-	-	6e-4	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.CL294Contig1_at	At2g30860	-	-	2e+0	At3g14290	PAE2	O.I.	H.G.	S.X.	Please select
0.52	73.1	PsAffx.CL176Contig1_s_at	At2g30860	-	-	4e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.psML008xI07f_s_at	At2g30860	-	-	6e-1	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.CL377Contig1_at	At2g30860	-	-	8e+0	At5g58640	selenoprotein-related	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.CL175Contig1_at	At2g30860	-	-	2e+0	At1g49150	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.C1267000001_s_at	At2g30860	-	-	5e+0	At5g51770	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	PsAffx.CL2Contig13_s_at	At2g30860	-	-	3e+0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.CL172Contig1_at	At2g30860	-	-	2e+0	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.CL122Contig1_at	At2g30860	-	-	1e-1	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C191000027_at	At2g30860	-	-	7e-1	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL93Contig1_at	At2g30860	-	-	2e+0	At3g13227	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.39	54.5	PsAffx.CL62Contig1_at	At2g30860	-	-	3e+0	At3g44235	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.CL210Contig1_at	At2g30860	-	-	5e+0	At3g47490	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.CL72Contig2_at	At2g30860	-	-	3e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.CL82Contig1_at	At2g30860	-	-	4e-32	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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