CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6233_s_at

Gene name
Homology with Arabidopsis Similar to At5g08790: ATAF2 (HF=3e-8)

Module size 6 genes

NF 0.66

%ile 87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.88 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.77 90.8 0.87 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.60 77.3 0.90 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.55 72.0 0.88 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein O.I. H.G. S.X.
0.40 53.1 0.87 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative O.I. H.G. S.X.
0.40 53.1 0.90 Contig6431_at Contig6431 - - 3e-1 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.83	rbah58n17_s_at	rbah58n17	-	-	1e+0	At1g77855	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.79	Contig7740_s_at	Contig7740	-	-	6e-1	At5g39645	-	O.I.	H.G.	S.X.
0.46	61.0	0.79	HT06H17r_at	HT06H17r	-	-	4e+0	At3g56090	ATFER3 (ferritin 3)	O.I.	H.G.	S.X.
0.44	58.9	0.87	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	O.I.	H.G.	S.X.
0.42	55.2	0.76	Contig12316_at	Contig12316	-	-	7e+0	At5g15750	RNA-binding S4 domain-containing protein	O.I.	H.G.	S.X.
0.42	55.2	0.78	HT10N20u_s_at	HT10N20u	-	-	5e+0	At5g15620	F-box family protein	O.I.	H.G.	S.X.
0.33	42.6	0.70	rbags11h24_at	rbags11h24	-	-	3e+0	At4g33985	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.79	Contig12697_at	Contig12697	-	-	3e-9	At1g52920	GPCR (G PROTEIN COUPLED RECEPTOR)	O.I.	H.G.	S.X.
0.32	40.3	0.83	Contig12695_at	Contig12695	-	-	2e-3	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.32	40.3	0.82	Contig1803_at	Contig1803	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.
0.31	38.6	0.88	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.
0.29	35.5	0.81	AF026538_at	AF026538	ABA-responsive protein	-	7e-1	At2g37580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	35.5	0.90	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.
0.27	32.1	0.82	Contig19948_at	Contig19948	-	-	9e-2	At2g21385	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.76	HVSMEn0024O03f_s_at	HVSMEn0024O03f	-	-	3e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.
0.26	30.4	0.77	Contig9035_at	Contig9035	-	-	1e-95	At1g06390	GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)	O.I.	H.G.	S.X.
0.25	28.9	0.82	HV06O23u_at	HV06O23u	-	-	1e+1	At5g48860	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.85	Contig7860_at	Contig7860	-	-	6e-2	At3g10730	sad1/unc-84-like 2 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.1 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1 98.9 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8 98.6 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2 98.5 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1 98.4 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.1 98.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7 97.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5 97.6 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM440974 Stressed awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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