CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6233_s_at

Gene name
Homology with Arabidopsis Similar to At5g08790: ATAF2 (HF=3e-8)

Module size 6 genes

NF 0.66

%ile 87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.88 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.77 90.8 0.87 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.60 77.3 0.90 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.55 72.0 0.88 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein O.I. H.G. S.X.
0.40 53.1 0.87 Contig6433_at Contig6433 - - 5e-1 At5g66460 (1-4)-beta-mannan endohydrolase, putative O.I. H.G. S.X.
0.40 53.1 0.90 Contig6431_at Contig6431 - - 3e-1 At2g18110 elongation factor 1-beta, putative / EF-1-beta, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.1 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1 98.9 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8 98.6 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2 98.5 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1 98.4 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.1 98.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7 97.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5 97.6 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM440974 Stressed awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the maize gene, Zm.5882.1.A1_at, orthologous to the query gene, Contig6233_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 81.1 Zm.5882.1.A1_at At5g08790 - - 2e-1 At1g52880 NAM (NO APICAL MERISTEM) O.I. H.G. S.X.
0.36 41.3 Zm.3930.1.S1_at At5g08790 AMP-binding protein - 8e-37 At3g05970 LACS6 (long-chain acyl-CoA synthetase 6) O.I. H.G. S.X.
0.33 36.0 Zm.9285.1.A1_at At5g08790 disease resistance response protein 206 - 6e+0 At5g46874 - O.I. H.G. S.X.
0.33 36.0 Zm.12746.1.A1_at At5g08790 somatic embryogenesis related protein - 1e+0 At2g18530 protein kinase family protein O.I. H.G. S.X.
0.17 10.6 Zm.6929.1.A1_a_at At5g08790 CDPK substrate protein 1 - 3e-5 At5g29000 myb family transcription factor O.I. H.G. S.X.
0.15 8.6 Zm.14012.1.S1_at At5g08790 hypothetical protein LOC100276126 - 9e-2 At4g35750 Rho-GTPase-activating protein-related O.I. H.G. S.X.
0.14 7.7 Zm.5881.1.A1_at At5g08790 - - 9e-8 At2g16640 TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) O.I. H.G. S.X.
0.14 7.7 Zm.1134.1.A1_at At5g08790 hypothetical protein LOC100193278 - 3e+0 At2g26940 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.12 5.9 Zm.547.1.A1_at At5g08790 glutathione transferase17 - 1e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage