Co-expression analysis

Gene ID	Contig6233_s_at
Gene name
Homology with Arabidopsis	Similar to At5g08790: ATAF2 (HF=3e-8)
Module size	6 genes
NF	0.66
%ile	87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.87	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.90	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig6433_at	Contig6433	-	-	5e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Contig6431_at	Contig6431	-	-	3e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.1	98.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8	98.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.1	98.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.1	98.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.92625.1.S1_s_at, orthologous to the query gene, Contig6233_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	GmaAffx.92625.1.S1_s_at	At5g08790	NAC domain protein	-	8e-42	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.81	91.7	Gma.15311.1.S1_at	At5g08790	-	-	2e-3	At3g06850	BCE2	O.I.	H.G.	S.X.	Please select
0.72	88.1	Gma.12012.1.S1_s_at	At5g08790	-	-	1e-14	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	O.I.	H.G.	S.X.	Please select
0.65	83.8	Gma.17989.1.S1_s_at	At5g08790	-	-	3e+0	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.2613.1.S1_at	At5g08790	-	-	5e-23	At5g04040	SDP1 (SUGAR-DEPENDENT1)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.17989.2.S1_s_at	At5g08790	-	-	5e+0	At5g53940	yippee family protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.13167.1.S1_at	At5g08790	monosaccharide transporter	-	2e-4	At1g77210	sugar transporter, putative	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.5701.2.S1_at	At5g08790	-	-	1e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.17592.1.S1_at	At5g08790	Peroxisomal citrate synthase precursor	-	3e-45	At2g42790	CSY3 (citrate synthase 3)	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.5701.1.S1_at	At5g08790	-	-	9e-13	At2g24100	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.7662.2.S1_at	At5g08790	-	-	6e-9	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.15311.2.S1_a_at	At5g08790	-	-	5e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.7662.1.S1_a_at	At5g08790	-	-	4e-5	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.3429.1.S1_at	At5g08790	-	-	1e-12	At1g21400	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.23763.1.S1_at	At5g08790	-	-	8e-47	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.16423.1.S1_at	At5g08790	-	-	2e-93	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.74229.1.S1_at	At5g08790	-	-	4e-1	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.3065.1.S1_s_at	At5g08790	-	-	1e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.16342.1.S1_at	At5g08790	-	-	4e-7	At3g01650	RGLG1 (RING domain Ligase1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage