Co-expression analysis

Gene ID	Contig6233_at
Gene name
Homology with Arabidopsis	Similar to At5g08790: ATAF2 (HF=3e-8)
Module size	15 genes
NF	0.28
%ile	35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.90	Contig6233_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig13539_at	Contig13539	-	-	2e-3	At2g25830	YebC-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig12503_at	Contig12503	-	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig13905_at	Contig13905	-	-	3e-6	At1g34300	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	HD01E23w_s_at	HD01E23w	actin	-	7e+0	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig24081_at	Contig24081	-	-	4e-1	At3g24516	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	HVSMEi0011P17r2_at	HVSMEi0011P17r2	-	-	9e-2	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig3101_at	Contig3101	-	-	1e-3	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig8592_at	Contig8592	-	-	7e-1	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig14516_at	Contig14516	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig13901_at	Contig13901	-	-	4e-1	At1g10140	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.93	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig4109_at	Contig4109	-	-	3e-66	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig9343_s_at	Contig9343	-	-	9e-5	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.7	92.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.4	91.4	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
2.3	90.9	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage