Co-expression analysis

Gene ID Contig6217_at
Gene name
Homology with ArabidopsisSimilar to At5g19820: emb2734 (embryo defective 2734) (HF=5e-86)
Module size 13 genes
NF 0.58
%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.97Contig6217_atContig6217--5e-86At5g19820emb2734 (embryo defective 2734)O.I.H.G.S.X.
0.8192.80.98rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.
0.7689.80.98EBem09_SQ001_B21_s_atEBem09_SQ001_B21--2e+0At5g36920unknown proteinO.I.H.G.S.X.
0.7287.40.98Contig2584_atContig2584--1e-6At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.6178.70.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.5874.90.98Contig11081_atContig11081--1e-26At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.5774.90.98Contig7221_s_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5674.30.98Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.5369.70.98HA12A08u_s_atHA12A08u--5e-2At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.5369.70.98Contig18703_atContig18703--1e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.5167.50.97Contig1913_s_atContig1913--2e-46At3g0920060S acidic ribosomal protein P0 (RPP0B)O.I.H.G.S.X.
0.4356.40.98Contig10380_x_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.3342.60.97Contig20936_atContig20936--3e-5At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.398.5GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.093.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.993.4GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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