Co-expression analysis

Gene ID Contig6211_at
Gene name
Homology with ArabidopsisSimilar to At1g04630: MEE4 (maternal effect embryo arrest 4) (HF=8e-9)
Module size 6 genes
NF 0.34
%ile 45.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.93Contig6211_atContig6211--8e-9At1g04630MEE4 (maternal effect embryo arrest 4)O.I.H.G.S.X.
0.6077.30.94Contig7298_atContig7298--6e-13At4g27700rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.5066.90.93EBem08_SQ003_L01_atEBem08_SQ003_L01--1e+0At3g53450unknown proteinO.I.H.G.S.X.
0.4356.40.94Contig4371_atContig4371--2e-9At1g63290ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeO.I.H.G.S.X.
0.2935.50.94Contig7109_atContig7109--1e-1At2g45480AtGRF9 (GROWTH-REGULATING FACTOR 9)O.I.H.G.S.X.
0.1311.60.93Contig6816_atContig6816--2e+0At4g13640UNE16 (unfertilized embryo sac 16)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.394.6GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.294.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261034Dicktoo-chilling-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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