Co-expression analysis

Gene ID	Contig6132_at
Gene name
Homology with Arabidopsis	Similar to At4g35300: TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) (HF=9e-8)
Module size	20 genes
NF	0.51
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Contig6132_at	Contig6132	-	-	9e-8	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	Contig2841_at	Contig2841	-	-	2e-3	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	Contig5995_at	Contig5995	-	-	2e+0	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig6012_at	Contig6012	-	-	6e-16	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.96	Contig5874_s_at	Contig5874	-	-	1e+0	At1g48610	AT hook motif-containing protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig2837_at	Contig2837	-	-	1e-12	At3g23800	SBP3 (selenium-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	Contig4880_at	Contig4880	-	-	2e-20	At1g61800	GPT2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig18108_at	Contig18108	-	-	2e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.96	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	Contig9320_at	Contig9320	-	-	2e-1	At4g03940	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig3850_at	Contig3850	-	-	1e-57	At1g79210	20S proteasome alpha subunit B, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig2909_s_at	Contig2909	-	-	7e-1	At3g18295	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.8	93.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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