Co-expression analysis

Gene ID	Contig6108_at
Gene name
Homology with Arabidopsis	Similar to At4g34860: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (HF=7e-20)
Module size	31 genes
NF	0.35
%ile	47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.88	Contig6108_at	Contig6108	-	-	7e-20	At4g34860	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.92	Contig17196_at	Contig17196	-	-	2e-4	At5g06180	-	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.92	Contig23882_at	Contig23882	-	-	2e-1	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig8050_at	Contig8050	-	-	6e-5	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.93	Contig20735_at	Contig20735	-	-	7e-2	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.91	rbaal33b21_s_at	rbaal33b21	-	-	7e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig88_x_at	Contig88	-	-	4e+0	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.92	HK06O22r_s_at	HK06O22r	-	-	3e+0	At5g34829	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	rbaal1l23_s_at	rbaal1l23	-	-	1e+0	At3g13280	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig14919_at	Contig14919	-	-	8e-34	At3g61790	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig6642_at	Contig6642	-	-	3e-77	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.90	Contig9677_at	Contig9677	-	-	1e-3	At1g14200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.91	Contig1242_at	Contig1242	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	Contig11733_at	Contig11733	-	-	3e-2	At2g22145	-	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	Contig9492_at	Contig9492	-	-	6e-5	At2g24280	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig8253_at	Contig8253	-	-	2e-3	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.91	Contig18939_at	Contig18939	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig11003_at	Contig11003	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	Contig8050_s_at	Contig8050	-	-	6e-5	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	HVSMEa0003B04r2_s_at	HVSMEa0003B04r2	-	-	3e+0	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	HVSMEf0002H04r2_at	HVSMEf0002H04r2	-	-	3e+0	At5g13250	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig7408_s_at	Contig7408	-	-	1e+0	At3g32260	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig8060_at	Contig8060	-	-	6e-1	At5g66700	HB53	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.92	Contig6154_s_at	Contig6154	-	-	2e-5	At3g59140	ATMRP14	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig16354_at	Contig16354	-	-	2e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig6421_at	Contig6421	-	-	2e+0	At2g34450	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig4371_at	Contig4371	-	-	2e-9	At1g63290	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.92	Contig3849_at	Contig3849	-	-	3e-67	At1g79210	20S proteasome alpha subunit B, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig17834_at	Contig17834	-	-	1e+0	At1g36980	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	rbaal1h20_s_at	rbaal1h20	-	-	2e-2	At5g53580	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig14831_at	Contig14831	-	-	7e+0	At5g22545	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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