Co-expression analysis

Gene ID Contig6082_at
Gene name
Homology with ArabidopsisSimilar to At3g52760: integral membrane Yip1 family protein (HF=2e+0)
Module size 8 genes
NF 0.64
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7489.10.97Contig6082_atContig6082--2e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.8092.50.97Contig12375_atContig12375--1e-4At3g28940avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putativeO.I.H.G.S.X.
0.6380.30.97Contig8695_atContig8695--3e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.6178.70.97Contig10840_atContig10840--4e-6At5g50780ATP bindingO.I.H.G.S.X.
0.5774.90.97Contig21045_atContig21045--4e+0At5g51130methyltransferaseO.I.H.G.S.X.
0.5470.30.97Contig9509_atContig9509--7e-1At3g23980unknown proteinO.I.H.G.S.X.
0.5369.70.97Contig3024_atContig3024--3e+0At3g13310DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4458.90.97Contig10037_atContig10037--9e-1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.494.8GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.394.6GSM71155Morex stress and unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.294.3GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.194.1GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
2.993.4GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.993.4GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.792.7GSM419974Lemma_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage