Co-expression analysis

Gene ID Contig6046_s_at
Gene name
Homology with ArabidopsisSimilar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=2e-1)
Module size 18 genes
NF 0.10
%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.89Contig6046_s_atContig6046--2e-1At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.2630.40.92HU10I03u_atHU10I03u--4e+0At3g53060ASK6 (ARABIDOPSIS SKP1-LIKE 6)O.I.H.G.S.X.
0.2326.10.92HA01L11u_x_atHA01L11u--2e-1At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.2122.60.95Contig12204_s_atContig12204--4e+0At2g45660AGL20 (AGAMOUS-LIKE 20)O.I.H.G.S.X.
0.1919.60.94Contig194_s_atContig194--4e-48At2g34420LHB1B2O.I.H.G.S.X.
0.1716.90.92Contig25133_atContig25133--1e+1At3g47810MAG1 (MAIGO 1)O.I.H.G.S.X.
0.1514.10.95Contig4830_atContig4830--6e-8At4g34240ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)O.I.H.G.S.X.
0.1210.40.94Contig26125_atContig26125--2e+0At2g3541033 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeO.I.H.G.S.X.
0.1210.40.95Contig25987_atContig25987--2e+0At3g61180zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.119.40.94Contig13326_atContig13326--2e-10At5g38720unknown proteinO.I.H.G.S.X.
0.119.40.95Contig4135_atContig4135--2e-7At4g08390SAPX (STROMAL ASCORBATE PEROXIDASE)O.I.H.G.S.X.
0.097.40.94EBem09_SQ005_C08_s_atEBem09_SQ005_C08--1e-1At4g21720unknown proteinO.I.H.G.S.X.
0.086.50.94Contig22226_atContig22226--6e-6At3g04670WRKY39O.I.H.G.S.X.
0.075.80.94Contig2941_atContig2941--2e+0At2g23320WRKY15O.I.H.G.S.X.
0.075.80.94Contig18432_atContig18432--8e-4At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.064.80.92Contig15082_s_atContig15082--6e+0At3g42473LCR47 (Low-molecular-weight cysteine-rich 47)O.I.H.G.S.X.
0.043.40.91Contig18497_atContig18497--4e+0At5g04070short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.043.40.93Contig21324_atContig21324--1e-4At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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