Co-expression analysis

Gene ID	Contig6046_s_at
Gene name
Homology with Arabidopsis	Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=2e-1)
Module size	18 genes
NF	0.10
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.89	Contig6046_s_at	Contig6046	-	-	2e-1	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	HU10I03u_at	HU10I03u	-	-	4e+0	At3g53060	ASK6 (ARABIDOPSIS SKP1-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	HA01L11u_x_at	HA01L11u	-	-	2e-1	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig12204_s_at	Contig12204	-	-	4e+0	At2g45660	AGL20 (AGAMOUS-LIKE 20)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig194_s_at	Contig194	-	-	4e-48	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig25133_at	Contig25133	-	-	1e+1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig4830_at	Contig4830	-	-	6e-8	At4g34240	ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig26125_at	Contig26125	-	-	2e+0	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig25987_at	Contig25987	-	-	2e+0	At3g61180	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig13326_at	Contig13326	-	-	2e-10	At5g38720	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig4135_at	Contig4135	-	-	2e-7	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	EBem09_SQ005_C08_s_at	EBem09_SQ005_C08	-	-	1e-1	At4g21720	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig22226_at	Contig22226	-	-	6e-6	At3g04670	WRKY39	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig2941_at	Contig2941	-	-	2e+0	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig18432_at	Contig18432	-	-	8e-4	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig15082_s_at	Contig15082	-	-	6e+0	At3g42473	LCR47 (Low-molecular-weight cysteine-rich 47)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	Contig18497_at	Contig18497	-	-	4e+0	At5g04070	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.93	Contig21324_at	Contig21324	-	-	1e-4	At5g65140	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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